HMMER User’s Guide

← Back to document page

HMMER User's Guide Biological sequence analysis using profile hidden Markov models Version ; February 2015. Sean R. Eddy, Travis J. Wheeler and the HMMER development team Copyright (C) 2015 Howard Hughes Medical Institute. Permission is granted to make and distribute verbatim copies of this manual provided the copyright notice and this permission notice are retained on all copies. HMMER is licensed and freely distributed under the GNU General Public License version 3 (GPLv3). For a copy of the License, see HMMER is a trademark of the Howard Hughes Medical Institute.

to guide how all the scoring parameters should be set. Though this might sound like a purely academic issue, this probabilistic basis lets us do things that …

  Guide