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Quick Start Guide 2 Computational Anatomy Toolbox - …

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ManualComputational Anatomy Toolbox - CAT12Quick Start Guide2Version Information4Introduction and Overview10Getting Started10Download and Installation10Starting the Toolbox11Basic VBM Analysis (Overview)11Overview of CAT12 Processing14CAT12 Major Processing Steps14CAT12 Processing Steps in Detail15Basic VBM Analysis (detailed description)17Preprocessing Data17First Module: Segment Data17Second Module: Display slices (optionally)18Third Module: Estimate Total Intracranial Volume (TIV)19Fourth Module: Check sample19Fifth Module: Smooth21Building the Statistical Model22Two-sample T-Test23Full Factorial Model (for a 2x2 Anova)24Multiple Regression (Linear)25Multiple Regression (Polynomial)26Full Factorial Model (Interaction)27Full Factorial Model (Polynomial Interaction)28Estimating the Statistical Model291Checking for Design Orthogonality29Defining Contrasts31Special Cases36CAT12 for longitudinal data36Optional Change of Parameters for Preprocessing39Preprocessing of Longitudinal Data39Longitudinal Data i

Naming convention of output files 60 Calling CAT from the UNIX command line 62 Technical information 63 CAT12 Citation 66 References 68 2. Quick Start Guide VBM data Segmentdata using defaults (useSegment LongitudinalDatafor longitudinal data). ... Interaction -- ...

  Computational, Anatomy, Interactions, Output, Toolbox, Computational anatomy toolbox

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