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Quick Start Guide 2 Computational Anatomy Toolbox - …

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ManualComputational Anatomy Toolbox - CAT12Quick Start Guide2Version Information4Introduction and Overview10Getting Started10Download and Installation10Starting the Toolbox11Basic VBM Analysis (Overview)11Overview of CAT12 Processing14CAT12 Major Processing Steps14CAT12 Processing Steps in Detail15Basic VBM Analysis (detailed description)17Preprocessing Data17First Module: Segment Data17Second Module: Display slices (optionally)18Third Module: Estimate Total Intracranial Volume (TIV)19Fourth Module: Check sample19Fifth Module: Smooth21Building the Statistical Model22Two-sample T-Test23Full Factorial Model (for a 2x2 Anova)24Multiple Regression (Linear)25Multiple Regression (Polynomial)26Full Factorial Model (Interaction)27Full Factorial Model (Polynomial Interaction)28Estimating the Statistical Model291Checking for Design Orthogonality29Defining Contrasts31Special Cases36CAT12 for longitudinal data36Optional Change of Parameters for Preprocessing39Preprocessing of longitudinal Data39Longitudinal Data in One Group40Longitudinal Data in Two Groups42Longitudinal Data in Two Groups with interaction of covariate by group44Adapting the CAT12 workflow for populations such as children48Customized Tissue Probability Maps48Customized Dartel- or Shooting-template49Other variants of Computational morphometry53Deformation-based morphometry (DBM)53Surface-based morphometry (SBM)54Region of interest (ROI) analysis57Additional information on native, normalized and modulat

longitudinal pipeline, the default segmentations for gray matter are named "mwp1r" or "mwmwp1r" if the longitudinal model for detecting larger changes was selected. Get Total Intracranial Volume(TIV) to correct fordifferent brain sizes and volumes. Select the xml-files that are saved in the "report" folder.

  Computational, Anatomy, Toolbox, Longitudinal, Computational anatomy toolbox

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