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Beginner's guide to using the DESeq2 package - VEuPathDB

beginner s guide to using the DESeq2 packageMichael Love1 , Simon Anders2, Wolfgang Huber21 Department of Biostatistics, Dana Farber Cancer Institute andHarvard School of Public Health, Boston, US;2 European Molecular Biology Laboratory (EMBL), Heidelberg, Germany michaelisaiahlove (at) 13, 2014 AbstractThis vignette describes the statistical analysis of count matrices for systematic changes be-tween conditions using theDESeq2package, and includes recommendations for producing countmatrices from raw sequencing data. This vignette is designed for users who are perhaps newto analyzing RNA-Seq or high-throughput sequencing data in R, and so goes at a slower pace,explaining each step in detail.

tween conditions using the DESeq2 package, and includes recommendations for producing count matrices from raw sequencing data. This vignette is designed for users who are perhaps new to analyzing RNA-Seq or high-throughput sequencing data in R, and so goes at a slower pace, explaining each step in detail.

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