Transcription of Olex2 Manual (Commands)
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Olex2 Manual (Commands)
1 Olex2 Manual (Commands) Draft: November, 2014 Contents Introduction .. 2 Understanding the Syntax .. 2 Tables of Olex2 Commands .. 3 Changing the Model View .. 3 Keyboard Shortcuts .. 5 Fixed/Refined Parameters .. 6 Atom Connectivity Table Manipulation .. 7 Symmetry Operations .. 9 Disorder Modelling: Constraints and Restraints .. 11 Selection Syntax .. 15 HKL file Operations .. 16 Customising the Olex2 17 Output: Tables, Reports and Images .. 19 Structure Analysis .. 21 How .. 23 Overlay molecules .. 24 Copy naming scheme from one fragment to 25 Get esd's on geometric measurements .. 25 Automated parameter recalculation .. 26 Automate tables of selected parameters .. 26 Get a stereo view .. 26 Pack or grow molecule(s) .. 27 Change P1 space group to P-1 .. 28 Change space group 29 To control console and graphics visibility .. 29 Select atoms that became 'too small'.
You can always examine the text output in your default text editor by typing text. Many commands in Olex2 are modelled on the syntax that may be familiar from SHELX: four letter commands, where the letters often provide a hint about the function of the command. Many commands that are available in XP, for example, can be used in Olex2.
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