Transcription of PAML: Phylogenetic Analysis by Maximum Likelihood
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PAML MANUAL 1 user Guide PAML: Phylogenetic Analysis by Maximum Likelihood Version (February 2020) Ziheng Yang PAML MANUAL 2 Copyright 1993-2016 by HZiheng Yang The software package is provided "as is" without warranty of any kind. In no event shall the author or his employer be held responsible for any damage resulting from the use of this software, including but not limited to the frustration that you may experience in using the package. The program package, including source codes, example data sets, executables, and this documentation, is maintained by Ziheng Yang and distributed under the GNU GPL v3.
baseml or codeml as user trees. baseml and codeml. The program baseml is for maximum likelihood analysis of nucleotide sequences. The program codeml is formed by merging two old programs: codonml, which implements the codon substitution model of Goldman and Yang (1994) for protein-coding
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