Transcription of Sequence Alignment/Map Format Speci cation
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Sequence Alignment/Map Format Speci cation
Sequence Alignment/Map Format SpecificationThe SAM/BAM Format Specification Working Group22 May 2018 The master version of this document can be found printing is version b1ae9f9 from that repository, last modified on the date shown The SAM Format SpecificationSAM stands for Sequence Alignment/Map Format . It is a TAB-delimited text Format consisting of a headersection, which is optional, and an alignment section. If present, the header must be prior to the lines start with @ , while alignment lines do not. Each alignment line has 11 mandatory fields foressential alignment information such as mapping position, and variable number of optional fields for flexibleor aligner specific specification is for version of the SAM and BAM formats.
1.3 The header section Each header line begins with the character ‘@’ followed by one of the two-letter header record type codes de ned in this section.
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