Transcription of TASSEL 5.0 Pipeline Command Line Interface
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TASSEL 5.0 Pipeline Command Line Interface
TASSEL Pipeline Command Line Interface : Guide to using TASSEL Pipeline Terry Casstevens ( ) Institute for Genomic Diversity, Cornell University, Ithaca, NY 14853-2703 July 31, 2019 Prerequisites1 Source Code1 Install1 Execute2 Increasing Heap Size2 Setting Logging to Debug or Standard (With optional filename)2 Examples2 Examples (XML Configuration Files)2 Setting Global Plugin Parameter Values (-configParameters)3 Usage3 Pipeline Controls3 Data4 Filter8 Analysis9 Results11 Prerequisites Java JDK or later ( ). Source Code git clone Install git clone OR 1 Execute On Windows, use to execute the Pipeline . In UNIX, use to execute the Pipeline . If you are using a Bash Shell on Windows, you may need to change the following line to use a ; instead of a.
TASSEL 5.0 Pipeline Command Line Interface: Guide to using Tassel Pipeline Terry Casstevens ( tmc46@cornell.edu ) Institute for Genomic Diversity, Cornell University, Ithaca, NY 14853-2703 July 31, 2019 Prerequisites 1 Source Code 1 Install 1 Execute 2 Increasing Heap Size 2 Setting Logging to Debug or Standard (With optional filename) 2
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