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The RAxML v8.2.X Manual - HITS gGmbH

The RAxML Manual by Alexandros StamatakisHeidelberg Institute for Theoretical StudiesJuly 20, 2016 Structure of this manualI. About RAxMLII. Getting Web-servers and GUIIV. Downloading RAxMLV. Compiling RAxMLVI. RAxML Likelihood Values & input File RAxML TC and IC RAxML Simple Heterotachous Model Asked QuestionsI. About RAxML RAxML (Randomized Axelerated Maximum Likelihood) is a program for sequential and parallelMaximum Likelihood based inference of large phylogenetic trees. It can also be used for post-analyses of sets of phylogenetic trees, analyses of alignments and, evolutionary placement of has originally been derived from fastDNAml which in turn was derived from Joe Felsentein sdnaml which is part of the PHYLIP package.

specify the ­# or ­N option in the command line, since it has been designed to do multiple inferences or rapid/standard BS (bootstrap) searches in parallel! For all remaining options, the usage of this type of coarse-grained parallelism does not make much sense! Processor Affinity and Thread Pinning with the PThreads Version

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Transcription of The RAxML v8.2.X Manual - HITS gGmbH

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