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HMMER User’s Guide - Eddy Lab
HMMER is used to search sequence databases for homologs of protein or DNA sequences, and to make sequence alignments. HMMER can be used to search sequence databases with single query sequences but it becomes particularly powerful when the query is an alignment of multiple instances of a sequence family.
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HMMER User's Guide - Eddy Lab
eddylab.orghmmer user’s guide 5 hmmscan - search sequence(s) against a profile database. . . . . . . . . . . . . . . 98 hmmsearch - search profile(s) against a sequence ...