Siddharth Jain - Paradise

1 Siddharth JainContactInformationDepartment of Electrical Engineering (EE)CaltechCell:+1 626-652-1958 Paradise Lab, Moore 311, MC 136-93, CA, 91125, sidjainInterestsQuality, Privacy and Value of Data, Causal Inference, Genome & Disease Prediction, DNA Storage,Information and Coding Theory, Artificial Institute of TechnologyAdvisor: Prof. Jehoshua BruckPhD, Electrical Engineering ; GPA 2013 - April 2019 PhD Thesis Title: Decoding the PastIndian Institute of Technology KanpurAdvisor: Prof. R. K. BansalB. Tech and M. Tech in Electrical Engineering2008 - 2013 GPA: B. Tech , M. Tech 10/10 Erd os Number:2 PatentSiddharth Jain, Bijan Mazaheri, Netanel Raviv, Jehoshua BruckDisease Risk Estimation from Mutation Profile of the GenomeProvisional Patent filed June (Accepted/Published) Jain, Farzad Farnoud, Jehoshua BruckCapacity and Expressiveness of Genomic Tandem Transactions on Information Theory, vol 63, no 10, pp. 1629-1638, October Jain, Farzad Farnoud, Moshe Schwartz, Jehoshua BruckDuplication Correcting Codes for Data Storage in the DNA of a living organismIEEE Transactions on Information Theory, vol 63, no 8, pp.

2 4996-5010, August Noga Alon*, Jehoshua Bruck*, Farzad Farnoud*, Siddharth Jain*Duplication Distance to the root for binary Transactions on Information Theory, vol 63, no 12, pp. 7793-7803, December 2017(*author list in alphabetical order). Jain, R. K. BansalOn Match Lengths, Zero Entropy and Large Deviations - with Application to Sliding WindowLempel-Ziv Transactions on Information Theory, vol. 61, no. 1, pp. 120-132, January Paul Bogdan, Siddharth Jain, Radu MarculescuPacemaker Control of Heart Rate Variability: A CPS Transactions on Embedded and Computing Systems (TECS), vol. 12, no. 1s, article 50,March Paul Bogdan, Radu Marculescu, Siddharth JainDynamic Power Management for Multi-domain Processor Systems-on-Chip Platforms: AnOptimal Control Transactions on Design Automation of Electronic Systems (TODAES), vol. 18, no. 4,article 46, October Jain, Bijan Mazaheri, Netanel Raviv, Jehoshua BruckCancer Classification from Healthy DNA using Machine LearningbioRxiv, doi: Jain, Bijan Mazaheri, Netanel Raviv, Jehoshua BruckShort Tandem Repeats Information in TCGA is Statistically Biased by AmplificationbioRxiv, doi: Netanel Raviv, Siddharth Jain, Jehoshua BruckData Equals Money, But How Much?

3 On Mathematical Methods for Data PricingCodMLworkshop, International Conference on Machine Learning (ICML), Jain, Netanel Raviv, Jehoshua BruckAttaining the 2nd Chargaff Rule by Tandem Duplicationsin Proceedings of IEEE International Symposium on Information Theory (ISIT), pp. 2241-2245, Vail, Colorado, June Jain, F. Farnoud, M. Schwartz, J. BruckNoise and Uncertainty in String-Duplication Systemsin Proceedings of IEEE International Symposium on Information Theory (ISIT), pp. 3120-3124, Aachen, Germany, June Jain, F. Farnoud, M. Schwartz, J. BruckDuplication Correcting Codes for DNA Storage in DNA of living organismin Proceedings of IEEE International Symposium on Information Theory (ISIT), pp. 1028-1032, Barcelona, Spain, July Noga Alon*, J. Bruck*, F. Farnoud*, Siddharth Jain*On the Duplication Distance of Binary Stringsin Proceedings of IEEE International Symposium on Information Theory (ISIT), pp. 260-264,Barcelona, Spain, July 2016 (*author list in alphabetical order).

4 Jain, F. Farnoud, J. BruckCapacity and Expressiveness of Genomic Tandem Proceedings of 2015 IEEE International Symposium on Information Theory (ISIT), , Hong Kong, July Jain, R. K. BansalOn Match Lengths and Asymptotic Behavior of Sliding Window Lempel-Ziv Algorithm for ZeroEntropy International Symposium on Information Theory (ISIT), pp. 2885-2889, Istanbul,Turkey, Jul Jain, R. K. BansalOn Large Deviation Property of Recurrence International Symposium on Information Theory (ISIT), pp. 2880-2884, Istanbul,Turkey, Jul Paul Bogdan, Radu Marculescu, Siddharth Jain, Rafael TorneroOptimal Power Management of Multidomain Multiprocessor Platforms under Highly of the 6th ACM/IEEE International Symposium on Networks-on- Chip (NOCS),pp. 35-42, Copenhagen, Denmark, May 2012 (Best Paper Award)10. Paul Bogdan, Siddharth Jain, Kartikeya Goyal, Radu MarculescuImplantable Pacemakers Control and Optimization via Fractional Calculus Approaches: ACyber-Physical Systems of the ACM/IEEE 3rd International Conference on Cyber-Physical Systems (IC-CPS), pp.

5 23-32, Beijing, China, April the Theory and Application Graduation day, San Diego, Feb Channel of the on Information Sciences and Systems, John Hopkins University, March the Programming Project (MPP) Workshop, Boston, Massachusetts, December Information Computational Genomics Summer Institute (CGSI), UCLA, July Correcting Codes for DNA Programming Project (MPP) Workshop, Seattle, Washington, January Jain, F. Farnoud, M. Schwartz, Jehoshua BruckCapacity and Diversity of Tandem Programming Project (MPP) Workshop, Jan 9-11, 2015, San Francisco California.[Invited]AcademicAchievements Selected for givingGraduation Day Talk at Information Theory and Applicationsmeeting in San Diego in 2019 amongst all CS and EE graduate students at Caltech. EE department fellowshipat Caltech for the academic year 2013-2014. Funding from NSF Expeditions in Molecular Programmingfrom 2014-2018. General Proficiency Medalfor the best academic performance in EE department at IITK anpur.

6 PhD fellowships from Caltech, Cornell, USC, UCSD, CMU. Best paper awardat 6th ACM/IEEE International Symposium on Networks-on-Chip (NOCS),2012. Academic Excellence Award(awarded to top 5% undergraduates) for all the academicyears at IIT Kanpur. (2008-2012) Selected forCSSI REU-Internship at Carnegie Mellon Universitygiven to 5 studentsall over India, 2011. Selected among top 2 undergraduate students of IIT Kanpur forIndo German WinterAcademy, 2010to attend a course on Semiconductor Processes and Devices Ranked Amongst top students in India writing theIndian Institute of TechnologyJoint Entrance Exam (JEE)2008 Certificate of meritin Chemistry (awarded to top in the country) in All India SeniorSecondary Certificate Examination 2008 ProfessionalActivitiesReviewer for IEEE Transactions on Information Theory, IEEE Communication Letters, ACM Trans-actions on Algorithms, Frontiers in Physiology, International Symposium on Information CoursesStatistical Inference, Information Theory, Learning Systems, Machine Learning and Data Mining,Probability and Statistics, Error Correcting Codes, Theory of Computation, Data Structures and Al-gorithms, Randomized Algorithms, Digital Signal Processing, Stochastic Processes, Markov Chains,Real and Complex Analysis, Differential Equations, Control System Analysis, Linear Estimation, SkillsProgramming Languages: C++, Python, Shell, MatlabBioinformatics Tools: Samtools, TRF, hipSTRM achine Learning Libraries: xgboost, sklearn, KerasGenome Databases: The Cancer Genome Atlas (TCGA), ICGC, 1000 Genome ProjectPosition ofResponsibility1.

7 Head TA for IST4 (Spring 2015, 2016, 2017, 2018)- An Information and Logic class offered to undergraduates at Caltech by Prof. Shuki Bruck2. TA for EE111 (Fall 2018)- Signal Processing class offered to undergraduates at Caltech by Prof. P. P. Vaidyanthan3. TA for EE621 (Aug 2012 - Nov 2012)- Stochastic Processes and Measure Theory class offered to graduate students at IIT Kanpurby Prof. R. K. Bansal4. Treasurer of the Caltech Cricket Club (Sept 2015-present) and the Indian Subcontinent Orga-nization at Caltech (Sept 2014-Aug 2015)5. Link Student, Counselling Service, IIT Kanpur - Help students who are not doing so wellacademically at IIT Mentor at National Service Scheme (NSS), India - Tutoring 6th-8th grade students in villagesof upon request.