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Basic Image Processing with FIJI/ImageJ

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Basic Image Processing with FIJI/ImageJ . Kristopher Kubow, , James Madison University CONTENTS (CLICK TO JUMP TO SECTION). 1 No matter what you are doing, READ THIS FIRST ........................................ ........................................ .. 1. 2 Downloading FIJI/ImageJ ........................................ ........................................ ....................................... 2. 3 Getting started ........................................ ........................................ ........................................ ............... 2. 4 Improving intensity visualization ........................................ ........................................ ........................... 3. 5 Working with multi-dimensional images opened as hyperstacks.

Grayscale is the same as Color except it shows the channels in grayscale. How to control the intensity and/or color of each channel: 1. Switch to Color mode using the pull-down menu. 2. Select the channel you want to change. 3. Change the brightness and contrast as described in …

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