Transcription of clusterProfiler: A universal enrichment tool for ...
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clusterProfiler: A universal enrichment tool for ...
Package clusterProfiler December 16, 2022 TypePackageTitleA universal enrichment tool for interpreting omics package supports functional characteristics of both coding and non-coding ge-nomics data for thousands of species with up-to-date gene annotation. It provides a univeral in-terface for gene functional annotation from a variety of sources and thus can be applied in di-verse scenarios. It provides a tidy interface to access, manipulate, and visualize enrichment re-sults to help users achieve efficient data interpretation. Datasets obtained from multiple treat-ments and time points can be analyzed and compared in a single run, easily revealing func-tional consensus and differences among distinct (>= )ImportsAnnotationDbi, downloader, DOSE (>= ), dplyr, enrichplot(>= ), , GOSemSim, gson (>= ), magrittr,methods, plyr, qvalue, rlang, stats, tidyr, utils, , knitr, rmarkdown, , prettydoc,ReactomePA, (docs), (paper) , Clustering, GeneSetEnrichment, GO, KEGG,MultipleComparison, Pathways, Reactome, documented:git_last_commit_date2022-11-0 1 Date/Publication2022-12-16 AuthorGuangchuang Yu [aut, cre, cph](< >),Li-Gen Wang [ctb],Erqiang Hu [ctb],Xiao Luo [ctb],Meijun Chen [ctb],Giovanni Dall'Olio [ctb],Wanqian Wei [ctb],Chun-Hui Gao [ctb] (< >)Rtopics documented:clusterProfiler-package.
Package ‘clusterProfiler’ March 3, 2022 Type Package Title A universal enrichment tool for interpreting omics data Version 4.2.2 Maintainer Guangchuang Yu <guangchuangyu@gmail.com>
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