limma Linear Models for Microarray and RNA-Seq Data …

limma : Linear Models for Microarray and RNA-Seq DataUser s GuideGordon K. Smyth, Matthew Ritchie, Natalie Thorne,James Wettenhall, Wei Shi and Yifang HuBioinformatics Division, The Walter and Eliza Hall Instituteof Medical Research, Melbourne, AustraliaFirst edition 2 December 2002 Last revised 14 November 2021 This free open-source software implements academic researchby the authors and co-workers. If you use it, please supportthe project by citing the appropriate journal articles listed inSection Introduction52 Citinglimma.. Installation .. How to get help ..93 Quick A brief introduction to R .. SamplelimmaSession .. Data Objects .. 134 Reading Microarray Scope of this Chapter.

Functions for reading and pre-processing expression data from Illumina BeadChips were intro-duced in limma 3.0.0. See the case study in Section 17.3 for an example of these. Limma can also be used in conjunction with the vst or beadarray packages for pre-processing Illumina data.

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  Linear, Model, Illumina, Microarray, Limma linear models for microarray and rna, Limma

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