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Microarray Analysis - The Basics

Microarray AnalysisThe BasicsThomas GirkeDecember 9, 2011 Microarray AnalysisSlide 1/42 TechnologyChallengesData AnalysisData DepositoriesR and BioConductorHomework AssignmentMicroarray AnalysisSlide 2/42 OutlineTechnologyChallengesData AnalysisData DepositoriesR and BioConductorHomework AssignmentMicroarray AnalysisTechnologySlide 3/42 Microarray and Chip TechnologyDefinitionHybridization-based technique that allows simultaneousanalysis of thousands of samples on a solid ProfilingGene copy numberResequencingGenotypingSingle-nucle otide polymorphismDNA-protein interaction ( : ChIP-on-chip)Gene discovery (.)

Microarray Analysis The Basics Thomas Girke December 9, 2011 Microarray Analysis Slide 1/42. Technology Challenges ... Comparisons with minimum number of variables Sample selection: maximum number of expressed genes ... to force the distribution of all ratios to have a median (mean) of 1 or the log-ratios to have a median (mean) of 0. ...

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