Transcription of Rsubread/Subread Users Guide - Bioconductor
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Rsubread/Subread Users Guide - Bioconductor
Rsubread/Subread Users GuideRsubread October 2021 Wei Shi and Yang LiaoOlivia Newton-John Cancer Research InstituteMelbourne, AustraliaCopyright 2011 - 2021 Contents1 Introduction32 Citation .. Download and installation .. BioconductorRsubreadpackage .. SourceForgeSubreadpackage .. How to get help ..73 The seed-and-vote mapping Seed-and-vote .. Detection of short indels .. Detection of exon-exon junctions .. Detection of structural variants (SVs) .. Two-scan read alignment .. Multi-mapping reads .. Mapping of paired-end reads ..124 Mapping reads generated by genomic DNA sequencing A quick start for using SourceForgeSubreadpackage.
Chapter 2 Preliminaries 2.1 Citation If you use Rsubread, you can cite: Liao Y, Smyth GK and Shi W (2019). The R package Rsubread is easier, faster,
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