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The SARS-CoV-2 genome

SARS-CoV-2 genome COVID-19 Genomic epidemiology Toolkit: module ShataviaS. Morrison, PhDBioinformatics Unit LeadCenters for Disease Control and PreventionToolkit mapPart 1: What is genomic epidemiology ? The SARS-CoV-2 How to read phylogenetic treesPart 2: Case SARS-CoV-2 sequencing in Healthcare cluster Community TransmissionPart 3: Getting started with Getting started with Linking epidemiologic data Microbial pathogens are diverseImages: Virus (Getty Images), E. coli (PHIL- CDC), Ebola (Getty Images), Mycobacterium tuberculosis (PHIL - CDC), Toxoplasma gondii (Getty), Fungi Penicillium (Getty) (Almost) Every microbial pathogen has a genomeStructure illustrations: Virus (Getty Images), E. coli (Getty Images), Ebola (CDC), Mycobacterium tuberculosis (CDC), Toxoplasma gondii (CDC), Fungi Penicillium (CDC) Nucleotides are the building blocks of genomes Chemical structures of nucleobases by Roland1952licensed under CC BY in genome sizeSARS-CoV-2 Nucleotides: ~30,000 Substitution rate: ~10-4 -10-3 Adapted from Gago, S et al.

cdc.gov/coronavirus The SARS-CoV-2 genome COVID-19 Genomic Epidemiology Toolkit: Module 1.2 Shatavia S. Morrison, PhD. Bioinformatics Unit Lead. Centers for …

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Transcription of The SARS-CoV-2 genome

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