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Rsubread

Found 2 free book(s)
Beginner's guide to using the DESeq2 package - VEuPathDB

Beginner's guide to using the DESeq2 package - VEuPathDB

workshop.veupathdb.org

featureCounts[5] Rsubread (Bioc) count matrix DESeqDataSetFromMatrix simpleRNASeq[6] easyRNASeq (Bioc) SummarizedExperiment DESeqDataSet In order to produce correct counts, it is important to know if the experiment was strand-speci c or not. For example, summarizeOverlaps has the argument ignore.strand, which should be set to TRUE

  Guide, Using, Beginner, Packages, Rsubread, Beginner s guide to using the deseq2 package, Deseq2

Rsubread/Subread Users Guide - Bioconductor

Rsubread/Subread Users Guide - Bioconductor

bioconductor.org

The Subread/Rsubread packages comprise a suite of high-performance software programs for processing next-generation sequencing data. Included in these packages are Subread aligner, Subjunc aligner, Sublong long-read aligner, Subindel long indel detection program,

  Guide, User, Users guide, Rsubread

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Beginner's guide to using the DESeq2 package, Rsubread, Users Guide