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The RAxML v8.2.X Manual - HITS gGmbH
cme.h-its.orgspecify the # or N option in the command line, since it has been designed to do multiple inferences or rapid/standard BS (bootstrap) searches in parallel! For all remaining options, the usage of this type of coarse-grained parallelism does not make much sense! Processor Affinity and Thread Pinning with the PThreads Version