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Introduction to Pr ogramming: Perl for Biologists
www.bsi.umn.eduIntroduction to Pr ogramming: Perl for Biologists Timothy M. Kunau Center for Biomedical Resear ch Informatics Academic Health Center University of Minnesota kunau@umn.edu Bioinformatics Summer Institute 2007. Outline ¥Art and Pr ogramming ¥Getting Started ¥Biology and Computer Science
Perl for Biologists - Cornell University
cbsu.tc.cornell.eduPerl for Biologists 1.2 27 PERL modules can be installed locally On Linux, run the command “cpan” . First time running cpan, you will need to configure the cpan. When prompted for questions, you can use the default answer by simply press “return”. Type “exit” and press “return” after cpanconfiguration is
Perl for Biologists - Cornell University
cbsu.tc.cornell.eduSession 8: Examples Perl for Biologists 1.2 9 • Load names of requested sequences into memory (e.g., as hash keys ) • Read the input fastafile, line by line