CIF について - sasj.jp

1 Journal of Surface Analysis , No. 2 (2014) p. 71-81 CIF - 71 - CIF CIF * 305-0047 1-2-1 (2014 10 1 : 2014 10 16 ) CIF CIF CIF Brief introduction about crystal-structure database and crystallographic data format, CIF 2. Crystallograhic Information File (CIF) Yoshitaka Matsushita* Research Network and Facility Services Division, National Institute for Materials Science (NIMS) 1-2-1 Sengen, Tsukuba, Ibaraki 305-0047, Japan (Received: October 1, 2014; Accepted: October 16, 2014) Crystallographic information including crystal structure is one of the most important knowledge to understand physical and chemical properties of the compounds.

2 Brief information of the Crystallographic Information File (CIF) format developed by committee of International Union of Crystallography, is given here. Using this CIF formatted data, we can access more easily to various kinds of databases and also to many programs to calculate properties of the compounds. Moreover, CIF is very effective tool to reduce misprinting on the scientific papers and reports. 1. [1] Copyright (c) 2014 by The Surface Analysis Society of Japan Journal of Surface Analysis , No. 2 (2014) p. 71-81 CIF - 72 - (Crystallographic Information File CIF) [2, 3] International Union of Crystallography IUCr Working Party on Crystallographic Information (WPCI) CIF 2.

3 1990 IUCr WPCI 1988 11 WPCI STAR (Self-defining Text Archive and Retrieval) [4, 5] STAR UNIX TeX O2 O_2_ O2- O^2-^ a CIF International Tables for Crystallography Vol.

4 G [6] CIF ab-initio CIF 3. CIF (Crystallographic Information File) data_ data_ CIF data_ CIF CIF Journal of Surface Analysis , No. 2 (2014) p. 71-81 CIF - 73 - A B C D E F CIF CIF _ _cell_length_a (7) SI a (7) (1) (11)

5 CIF CIF loop_ loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_occupancy C1 C (5) (3) (2) (8) C2 C (5) (3) (3) (9) C3 C (5) (3) (3) (8) C1 x = (5) y = (3) z = (2) (8) 2 100% C2 Fortran 80 2048 [6] ;; _publ_section_abstract ; ; CIF CIF data_global 1.

6 Submission details 2. Processing summary (IUCr office use only) 3. Title and author list 4. Text _publ_ _journal_ IUCr Acta Crystallography (A, B, C, D, E ) Journal of Surface Analysis , No. 2 (2014) p. 71-81 CIF - 74 - _journal_ IUCr Text _publ_section_ CIF CIF JPEG CIF caption CIF CIF CIF CIF 1. Submission details corresponding author _publ_contact_author_name 'Yoshitaka Matsushita' _publ_contact_author_address ; Research Network and Facility Services Division National Institute for Materials Science (NIMS) 1-2-1 Sengen, Tsukuba, Ibaraki 305-0047 Japan ; _publ_contact_author_phone '81-29-851-3354' _publ_contact_author_fax ' ' _publ_contact_author_email _publ_requested_journal ?

7 _publ_requested_coeditor_name ? Elsevier Willey [1] CIF priority CIF data_ CIF IUCr SHELXL 2014/6 release [7] CIF _audit_creation_method SHELXL-2014/6 _chemical_ (IUPAC, International Union of Pure and Applied Chemistry) _chemical_name_systematic ; ? ; _chemical_name_common ? _chemical_melting_point ? _chemical_formula_moiety ? _chemical_formula_sum 'C16 H12 O4 S10' _chemical_formula_weight _atom_type_ _space_group_ _cell_ _space_group_ _cell_ _space_group_crystal_system monoclinic _space_group_IT_number 14 _space_group_name_H-M_alt 'P 21/n' _space_group_name_Hall '-P 2yn' loop_ _space_group_symop_operation_xyz 'x, y, z' '-x+1/2, y+1/2, -z+1/2' '-x, -y, -z' 'x-1/2, -y-1/2, z-1/2' _cell_length_a (2) _cell_length_b (14) _cell_length_c (2) Journal of Surface Analysis , No.

8 2 (2014) p. 71-81 CIF - 75 - _cell_angle_alpha 90 _cell_angle_beta (6) _cell_angle_gamma 90 _cell_volume (6) _cell_formula_units_Z 4 _exptl _ mm '' _exptl_crystal_description 'Plate' _exptl_crystal_colour 'Red' _exptl_crystal_size_max _exptl_crystal_size_mid _exptl_crystal_size_min _diffrn_ R K R hkl

9 _diffrn_ambient_temperature 110(2) _diffrn_radiation_wavelength _diffrn_radiation_type MoK a _diffrn_measurement_device ; Rigaku AFC11 Saturn724+ (2x2 bin mode) ; _diffrn_reflns_number 21278 _diffrn_reflns_av_R_equivalents _diffrn_reflns_limit_h_min -11 _diffrn_reflns_limit_h_max 12 _diffrn_reflns_limit_k_min -13 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_l_min -36 _diffrn_reflns_limit_l_max 36 _computing_ _computing_data_collection 'CrystalClear (Rigaku Inc., 2008)' _computing_cell_refinement 'CrystalClear (Rigaku Inc., 2008)' _computing_data_reduction 'CrystalClear (Rigaku Inc., 2008)' _computing_structure_solution 'SHELXS-2014/6 (Sheldrick, 2014)' _computing_structure_refinement 'SHELXL-2014/6 (Sheldrick, 2014)' _atom_sites_solution_ _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _refine_ls_ F2 Scale R GOF (= S) _refine_ls_structure_factor_coef Fsqd _refine_ls_matrix_type full _refine_ls_weighting_scheme calc Journal of Surface Analysis , No.

10 2 (2014) p. 71-81 CIF - 76 - _refine_ls_R_factor_gt _refine_ls_goodness_of_fit_ref _refine_ls_shift/su_max _refine_ls_shift/su_mean . loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_site_symmetry_order _atom_site_calc_flag _atom_site_refinement_flags_posn _atom_site_refinement_flags_adp _atom_site_refinement_flags_occupancy _atom_site_disorder_assembly _atom_site_disorder_group S1 S (10) (9) (3) (2) Uani 1 1 d.