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Open chromatin interaction maps reveal functional ...
motifs of various transcription factors are significantly enriched in the hubs of open ... temporal and spatial patterns of gene expression in plant development and environ-mental response [1, 2]. Actively engaged CREs normally reside in accessible chromatin ... leading to alteration of transcriptome networks [20]. Wheat is a
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A survey of best practices for RNA-seq data analysis
genomebiology.biomedcentral.comJan 12, 2016 · REVIEW Open Access A survey of best practices for RNA-seq data analysis Ana Conesa1,2*, Pedro Madrigal3,4*, Sonia Tarazona2,5, David Gomez-Cabrero6,7,8,9, Alejandra Cervera10, Andrew McPherson11, Michał Wojciech Szcześniak12, Daniel J. Gaffney3, Laura L. Elo13, Xuegong Zhang14,15 and Ali Mortazavi16,17* Abstract RNA-sequencing (RNA-seq) has …
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genomebiology.biomedcentral.comcom; hfyin@sibs.ac.cn 1State Key Laboratory of Tree Genetics and Breeding, Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Zhejiang 311400, Hangzhou, China Full list of author information is available at the end of the article Abstract Background: As a perennial crop, oil-Camellia possesses a long domestication history
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