Transcription of Documentation for structure software: Version 2
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Documentation for structure software: Version 2
Documentation forstructuresoftware: Version K. PritchardaXiaoquan WenaDaniel Falushb123aDepartment of Human GeneticsUniversity of ChicagobDepartment of StatisticsUniversity of OxfordSoftware 2, 20101 Our other colleagues in thestructureproject are Peter Donnelly, Matthew Stephens and Melissa first Version of this program was developed while the authors (JP, MS, PD) were in the Departmentof Statistics, University of and questions aboutstructureshould be addressed to the online forum Please check this document and search the previous discus-sion before posting Overview .. What s new in Version .. 32 Format for the data Components of the data file: .. Rows .. Individual/genotype data .. Missing genotype data .. Formatting errors.. 73 Modelling decisions for the Ancestry Models .. Allele frequency models.
1.2 What’s new in Version 2.3? The 2.3 release (April 2009) introduces new models for improving structure inference for data sets where (1) the data are not informative enough for the usual structure models to provide accurate in-
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