Transcription of Rsubread/Subread Users Guide - Bioconductor
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Rsubread/Subread Users Guide - Bioconductor
Rsubread/Subread Users GuideRsubread October 2021 Wei Shi and Yang LiaoOlivia Newton-John Cancer Research InstituteMelbourne, AustraliaCopyright 2011 - 2021 Contents1 Introduction32 Citation .. Download and installation .. BioconductorRsubreadpackage .. SourceForgeSubreadpackage .. How to get help ..73 The seed-and-vote mapping Seed-and-vote .. Detection of short indels .. Detection of exon-exon junctions .. Detection of structural variants (SVs) .. Two-scan read alignment .. Multi-mapping reads .. Mapping of paired-end reads ..124 Mapping reads generated by genomic DNA sequencing A quick start for using SourceForgeSubreadpackage .. A quick start for using BioconductorRsubreadpackage .. Index building.
The Subread/Rsubread packages comprise a suite of high-performance software programs for processing next-generation sequencing data. Included in these packages are Subread aligner, Subjunc aligner, Sublong long-read aligner, Subindel long indel detection program,
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