Rsubread/Subread Users Guide - Bioconductor
The Subread/Rsubread packages comprise a suite of high-performance software programs for processing next-generation sequencing data. Included in these packages are Subread aligner, Subjunc aligner, Sublong long-read aligner, Subindel long indel detection program,
Download Rsubread/Subread Users Guide - Bioconductor
Information
Domain:
Source:
Link to this page:
Documents from same domain
clusterProfiler: A universal enrichment tool for ...
bioconductor.orgPackage ‘clusterProfiler’ January 6, 2022 Type Package Title A universal enrichment tool for interpreting omics data Version 4.2.1 Maintainer Guangchuang Yu <guangchuangyu@gmail.com> Description This package supports functional characteristics of both coding and non-coding ge-nomics data for thousands of species with up-to-date gene ...
limma: Linear Models for Microarray Data
bioconductor.org2.An overview of limma functions grouped by purpose is contained in the numbered chapters at the foot of the LIMMA package index page, of which this page is the first. 3.The LIMMA contents page gives an alphabetical index of detailed help topics. The function changeLog displays the record of changes to the package. Author(s)
Related documents
Beginner's guide to using the DESeq2 package - VEuPathDB
workshop.veupathdb.orgfeatureCounts[5] Rsubread (Bioc) count matrix DESeqDataSetFromMatrix simpleRNASeq[6] easyRNASeq (Bioc) SummarizedExperiment DESeqDataSet In order to produce correct counts, it is important to know if the experiment was strand-speci c or not. For example, summarizeOverlaps has the argument ignore.strand, which should be set to TRUE