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Practical course using the software ||||| Introduction …
Practical course using thesoftware Introduction to genetic data analysis inThibaut Jombart AbstractThis Practical course is meant as a short Introduction to genetic dataanalysis using [10]. After describing the main types of data, we illus-trate how to perform some basic population genetics analyses, and then gothrough constructing trees from genetic distances and performing standardmultivariate analyses. The Practical uses mostly the packagesadegenet[6],ape[9] andade4[1, 3, 2], but others likegenetics[11] andhierfstat[5] arealso Let s Loading the packages .. How to get information? ..32 Handling the Data formats .. Importing / exporting data .. Manipulating data ..83 Basic population genetics94 Making Hierarchical clustering .. ape and phylogenies .. 135 Multivariate ade4 .. Principal Component Analysis (PCA) .. Principal Coordinates Analysis (PCoA).
trate how to perform some basic population genetics analyses, and then go through constructing trees from genetic distances and performing standard multivariate analyses.
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